species:   Clros
pid:       PID2250
parent:    cro-mir-45
paralog:   
locus:     CADEHS020000001.2:3000662-3000739
matures:   ['UGCAGGGCUCUUUUGGG', 'UUGGAGAGUGAGACAGG']
srr:       ERR5950791
genome:    /Users/jax/+Genomes/Fungal_genomes/Clros.GCA_902827195.2_C_rosea_IK726_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950791.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950791.cram CADEHS020000001.2:3000662-3000739

3 out of bounds
7 alignments
6 proper strand
6 stranded perfect matches

   ****************                                           ****************
UUAUAUUGGAGAGUGAGACAGGACCAACGGGCUUGCUGGAUUAGCAUGGGUCAUUGAUUACUGCAGGGCUCUUUUGGG
.......(((((((....(((...(((.((.(((((((...))))).)).)).)))....)))....)))))))....
-------------------------------------------------------------UGCAGGGCUCUUUUGGG l=17 a=0 c
-----UUGGAGAGUGAGACAGG-------------------------------------------------------- l=17 a=0 c*
----------------------------------------------------------------AGGGCUCUUUUGGG l=14 a=2 ma
-----UUGGAGAGUGAGAC----------------------------------------------------------- l=14 a=0 ma*

----------------------------------------------------------------AGGGCUCUUUUGG- l=13 a=1 
----------------------------------------------------------------AGGGCUCUUUUGGG l=14 a=2 (ma)
---------------------------------------------------------------CAGGGCUCUUUUG-- l=13 a=1 
---------------------------------------------------------------CAGGGCUCUUUUGG- l=14 a=2 

mb-01010
ax-1001001
ku-01
ss-101011101110
fn-111
